Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGAIERSGYTFQPEFSVVRQNGAIHVYHQGEFVEEIEFEFNGEYPDHDLIEELVNHYCFEHEI
4M8A Chain:A ((27-65))
----------------VIRDDGVLRVYTKDGRVYEVDAPWAV--NDSQLIEKLVSKG------
General information:
TITO was launched using:
RESULT:
Template:
4M8A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10130 for 178 contacts (-56.9/contact) +
2D Compatibility (PS) -4459 + (NN) -1809 + (LL) 1692
1D Compatibility (HY) -3600 + (ID) 650
Total energy: -18956.0 ( -106.49 by residue)
QMean score : 0.288
(partial model without unconserved sides chains):
PDB file :
Tito_4M8A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M8A-query.scw
PDB file :
Tito_Scwrl_4M8A.pdb
: