Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEKDPSDYTVTQESVLKLIQEQKRMNREMITELEQIHGPFPISHDIQYIKVLLDSSNTHIVQDLMSVSKQLYKKTL
2WAF Chain:A ((427-464))----------------------------------QAYGSFPITA----VQALEYSSNTYMVQTALGLMGQTYQPNM


General information:
TITO was launched using:
RESULT:

Template: 2WAF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 52 -5593 -107.56 -147.18
target 2D structure prediction score : 0.50
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : -107.56
2D Compatibility (Sec. Struct. Predict.) : 0.50
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.322

(partial model without unconserved sides chains):
PDB file : Tito_2WAF.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2WAF-query.scw
PDB file : Tito_Scwrl_2WAF.pdb: