Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDQPWNANIHYDALLDAMVPLGTQCVLDVGCGDGLLAARLARRIP--YVTAVDIDAPVLRRAQTRFANAPIR---WLHADIMTAELPNAGFDAVVSNAALHHIEDTRTALSRLGGLVTPGGTLAVVTFVTPSLRNGLWHLTSWVACGMANRVKGKWEHSAPIKWPPPQTLHELRSHVRALLPGACIRRLLYGRVLVTWRAPV
3MGG Chain:A ((30-139))
---------------DTVYPPGAK-VLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVI----------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3MGG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85521 for 767 contacts (-111.5/contact) +
2D Compatibility (PS) -11165 + (NN) -3787 + (LL) 6412
1D Compatibility (HY) -8000 + (ID) 1650
Total energy: -103711.0 ( -135.22 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_3MGG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MGG-query.scw
PDB file :
Tito_Scwrl_3MGG.pdb
: