Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSHTDLTPCTRVLASSGTVPIAEELLARVLEPYSCKGCRYLIDAQYSATEDSVLAYGNFTIGESAYIRSTGHFNAVELILCFNQLAYSAFAPAVLNEEIRVLRGWSIDDYCQHQLSSMLIRKASSRFRKPLNPQKFSARLLCRDLQVIERTWRYLKVPCVIEFWDENGGAASGEIELAALNIP
2PFC Chain:A ((20-183))
-------------------PIAEELLARVLEPYSCKGCRYLIDAQYSATEDSVLAYGNFTIGESAYIRSTGHFNAVELILCFNQLAYSAFAPAVLNEEIRVLRGWSIDDYCQHQLSSMLIRKASSRFRKPLNPQKFSARLLCRDLQVI---WRYLKVPCVIEFWD-NGGAASGEIELAALNIP
General information:
TITO was launched using:
RESULT:
Template:
2PFC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157582 for 1256 contacts (-125.5/contact) +
2D Compatibility (PS) -16412 + (NN) 301 + (LL) 1384
1D Compatibility (HY) -25600 + (ID) 8000
Total energy: -205909.0 ( -163.94 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_2PFC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PFC-query.scw
PDB file :
Tito_Scwrl_2PFC.pdb
: