Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKPRNPADYVIGDDVEVSDVDLKQEEVY---VDGERL-----------TDERVEQMASESLRLAREREANL-IPGGKSLSGGSAHSPAVQVVVSKATHAKLKELARSRKMSVSKLLRPVLDEFVQRETGRILPRR
1E4G Chain:T ((270-345))
----------------------DLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAK-GIPGGVVLTGGGAKIPRIN---------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1E4G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106 for 195 contacts (-0.5/contact) +
2D Compatibility (PS) -5943 + (NN) -3717 + (LL) 5256
1D Compatibility (HY) -3200 + (ID) 1150
Total energy: -8860.0 ( -45.44 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_1E4G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1E4G-query.scw
PDB file :
Tito_Scwrl_1E4G.pdb
: