Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNRIVLEPSADHPITIEPTNRRVQVRVNGEVVADTAAALCLQEASYPAVQYIPLADVVQDRLIRTETSTYCPFKGEASYYSVTTDAGDIVDDVMWTYENPYPAVAAIAGHVACYPDKAEISIFPG
3DJM Chain:A ((5-116))
-----------NNHIRLRKAEGKWVIRTDSAVLGETLNAIELTEGSRDPVIYFPREDVAMVMFDKSEKVTACPLKGEASYYSIVGASGTL-KDAAWSYESPKEGLEAIAGYLAFAPDCTKVGQY--
General information:
TITO was launched using:
RESULT:
Template:
3DJM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81758 for 807 contacts (-101.3/contact) +
2D Compatibility (PS) -12203 + (NN) -6778 + (LL) 732
1D Compatibility (HY) -6000 + (ID) 1900
Total energy: -107907.0 ( -133.71 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_3DJM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DJM-query.scw
PDB file :
Tito_Scwrl_3DJM.pdb
: