Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGMDQQPNPPDVDAFLDSTLVGDDPALAAALAASDAAELPRIAVSAQQGKFLCLLAGAIQARRVLEIGTLGGFSTIWLARGAGPQGRVVTLEYQPKHAEVARVNLQRAGVADRVEVVVGPALDTLPTLAG---GPFDLVFIDADKENNVAYIQWAIRLARRGAVIVVDNVIRGGGILAESDDADAVAARRTLQMMGEHPGLDATAIQTVGRKGWDGFALALVR
3DUL Chain:A ((10-222))
-----------VDQYVSDVLIPKDSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVR---------------IRRFYELIAAEPRVSATALQTVGSKGYDGFIMAVVK
General information:
TITO was launched using:
RESULT:
Template:
3DUL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131986 for 1569 contacts (-84.1/contact) +
2D Compatibility (PS) -21443 + (NN) -11433 + (LL) 312
1D Compatibility (HY) -18000 + (ID) 5050
Total energy: -187600.0 ( -119.57 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_3DUL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DUL-query.scw
PDB file :
Tito_Scwrl_3DUL.pdb
: