Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAFPRTLAILAAAAALVVACSHGGTPTGSSTTSGASPATPVAVPVPRSCAEPAGIPALLSPRDKLAQLLVVGVRDAADAQAVVTNYHVGGILIGSDTDLT-IFDGALAEIVAGGGPLPLAVSVDEEGGRVSRLRSLIGGTGPSARELAQTRTVQQVRDLARDRGRQMRKLGITIDFAPVVDVTDAPDDTVIGDRSFGSDPATVTAYAGAYAQGLRDAGVLPVLKHFPGHGRGSGDSHNGGVTTPPLDDLVGDDLVPYRTLVTQAPVGVMVGHLQVPGLTGSEPASLSKAAVNLLRTGTGYGAPPFDGPVFSDDLSGMAAISDRFGVSEAVLRTLQAGADIALWVTTKEVPAVLDRLEQALRAGELPMSAVDRSVVRVATMKGPNPGCGR |
| 4YYF Chain:A ((34-361)) | -------------------------------------------------CDLAALPA----RDKLAQLLTVGVTDAADARAVVADHHVGGIMIGSWTDLSMLTDGSLGDIAASAAPLPLAVSVDEEGGRVSRLASLIG-SQPSARELARTKTADEVYGIALDRGRKMRDLGVTVDFAPVVDVTDAAADTVIGDRSFGSDPAVVTEYAGAYARGLRDAGVLPVLKHFPGHGHASGDSHTGGVTTPPLDVLMGDDLVPYRTLTGQAPVAVMVGHMQVPGLTGSDPASLSPAVYNLLRSGGYGGP-GFGGLVYTDDLSSMGAINQRYGVADAVLRALQAGADNALWITTAEVPAVLDRLEQALASGELNQGAVDASLQRNAAVKGP------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YYF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 24793 for 2849 contacts (8.7/contact) +
2D Compatibility (PS) -33640 + (NN) -5127 + (LL) 2948
1D Compatibility (HY) 13600 + (ID) 2650
Total energy: -76.0 ( -0.03 by residue)
QMean score : 0.139
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