Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARQVFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISHVYGLPPGMR
1XXO Chain:A ((5-147))
----VFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISHVYGLPPGMR
General information:
TITO was launched using:
RESULT:
Template:
1XXO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76339 for 1062 contacts (-71.9/contact) +
2D Compatibility (PS) -15913 + (NN) -13458 + (LL) 572
1D Compatibility (HY) -18400 + (ID) 7150
Total energy: -130688.0 ( -123.06 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_1XXO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XXO-query.scw
PDB file :
Tito_Scwrl_1XXO.pdb
: