Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSPLAPVGVFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYGPLTIPEIRAHALAIGDDLVGRGVKALVIACNSASSACLRDARERYQVPVVEVILPAVRRAVAATRNGRIGVIGTRATITSHAYQDAFAA-ARDTEITAVACPRFVDFVERGVTSGRQVLGLAQGYLEPLQRAEVDTLVLGCTHYPLLSGLIQLAMGENVTLVSSAEETAKEVVRVLTEIDLLRPHDAPPATRIFEATGDPEAFTKLAARFLGPVLGGVQPVHPSRIH
3HFR Chain:A ((3-256))
--AMKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKATRNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALLDYHNLLDATDEEIEHRFF-TTGSTQIFKDIAKDWLN---------------
General information:
TITO was launched using:
RESULT:
Template:
3HFR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -245714 for 2300 contacts (-106.8/contact) +
2D Compatibility (PS) -28298 + (NN) -12077 + (LL) 704
1D Compatibility (HY) -24000 + (ID) 5400
Total energy: -314785.0 ( -136.86 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_3HFR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HFR-query.scw
PDB file :
Tito_Scwrl_3HFR.pdb
: