Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRAKAAPVAGPEVAANRAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGIYVVPEDGSPVRGVSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFENLR
3ERE Chain:D ((15-170))
--------------AANRAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGIYVVPEDGSPVRGVSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFENLR
General information:
TITO was launched using:
RESULT:
Template:
3ERE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92199 for 1170 contacts (-78.8/contact) +
2D Compatibility (PS) -17861 + (NN) -13591 + (LL) 956
1D Compatibility (HY) -18000 + (ID) 7800
Total energy: -148495.0 ( -126.92 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_3ERE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ERE-query.scw
PDB file :
Tito_Scwrl_3ERE.pdb
: