Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRPRTDAIHHHVVVNAPIERAFAVFTTRFGDFKPREHNLLAIPITETVFECHAGGHIYDRGVDGSVCKWARVLVYEPPSRVLFTWDIGPTWRPETDLAKTSEVEVRFTAQSAETTRVDLEHRHLDRHGPG-WESVADGVDSEAGWPLYLRRYTDLLCIQVQP
1ZXF Chain:A ((6-148))
--------VRHSVTVKADRKTAFKTFLEGFPEWWP--NNFRTTKVGAPLGVDKKGGRWYEIDEQGEEHTFGLIRKVDEPDTLVIGWRLNGFGRIDPD--NSSEFTVTFVADGQKKTRVDVEHTHFDRMGTKHAKRVRNGMDK--GWPTILQSFQDKI------
General information:
TITO was launched using:
RESULT:
Template:
1ZXF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45347 for 1091 contacts (-41.6/contact) +
2D Compatibility (PS) -15099 + (NN) -5749 + (LL) 1764
1D Compatibility (HY) -6800 + (ID) 2050
Total energy: -73281.0 ( -67.17 by residue)
QMean score : 0.328
(partial model without unconserved sides chains):
PDB file :
Tito_1ZXF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZXF-query.scw
PDB file :
Tito_Scwrl_1ZXF.pdb
: