Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTATQSPPEPAPDRVRLAGCPLAGTPDVGLTAQDATTALGVPTRRRASSGGIPVATSMWRDAQTVRTYGPAVAKALALRVAGKARSRLTGRHCRKFMQLTDFDPFDPAIAADPYPHYRELLAGERVQYN--PKRDVYILSRYADVREAARN-------HDTLSSARGVTFSRGWLPFLPTSDPPAHTRMRKQLAPGMARGALETWRPMVDQLARELVGGLLTQTPADVVSTVAAPMPMRAITSVLGVDGPDEAAFCRLSNQAVRITDV-ALSASGLISLVQGFAGFRRLRALFTHRR---DNGLLRECTVLGKLATHAEQG-RLSDDELFFFAVLLLVAGYESTAHMISTLFLTLADYPDQLTLLAQQPDLIPSAIEEHLRFISPI-QNICRTTRVDYSVGQAVIPAGSLVLLAWGAANRDPRQYEDPDVFRADRNPVGHLAFGSGIHLCPGTQLARMEGQAILREIVANIDRIEV-----VEPPTWTTNANLRGLTRLRVAVTPRVAP |
| 3VRM Chain:A ((12-403)) | ------------------------------------------------------------------------------------------------------DLFSGTFWQNPHPAYAALRAEDPVRKLALPDGPVWLLTRYADVREAFVDPRLSKDWRHTLPEDQRADMPATPTPMMILMDPPDHTRLRKLVGRSFAVRRMNELEPRITEIADGLLAGLPTDGPVDLMREYAFQIPVQVICELLGVPAEDRDDFSAWSS--VLVDDSPADDKNAAMGKLHGY-----LSDLLERKRTEPDDALLSSL-----LAVSDEDGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAEDPSLISSAVEEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRDADWMPEPDRLDITRDASGGVFFGHGIHFCLGAQLARLEGRVAIGRLFA--DRPELALAVGLDELVYRESTLVRGLSRMPVTMGPRSA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VRM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -229425 for 3003 contacts (-76.4/contact) +
2D Compatibility (PS) -40793 + (NN) -28597 + (LL) 6688
1D Compatibility (HY) -28800 + (ID) 7000
Total energy: -327927.0 ( -109.20 by residue)
QMean score : 0.490
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