Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGGTFDPIHYGHLVAASEVADLFDLDEVVFVPSGQPWQKGRQVSAAEHRYLMTVIATASNPRFSVSRVDIDRGGPTYTKDTLADLHALHPDSELYFTTGADALASIMSWQGWEELFELARFVGVSRPGYELRNEHITSLLGQLAKDALTLVEIPALAISSTDCRQRAEQSRPLWYLMPDGVVQYVSKCRLYCGACDAGARSTTSLAAGNGL
4X0E Chain:A ((9-199))
MGGTFDPIHYGHLVAASEVADLFDLDEVVFVPSGQPWQK--QVSAAEHRYLMTVIATASNPRFSVSRVDIDRGGPTYTKDTLADLHALHPDSELYFTTGADALASIMSWQGWEELFELARFVGVSRPGYELRNEHITSLLGQL-KDALTLVEIPALAISSTDCRQRAEQSRPLWYLMPDGVVQYVSKCRLY--------------------
General information:
TITO was launched using:
RESULT:
Template:
4X0E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144164 for 1461 contacts (-98.7/contact) +
2D Compatibility (PS) -20389 + (NN) -10245 + (LL) 560
1D Compatibility (HY) -27200 + (ID) 9400
Total energy: -210838.0 ( -144.31 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_4X0E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4X0E-query.scw
PDB file :
Tito_Scwrl_4X0E.pdb
: