Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVSRRDVLKFAAATPGVLGLGVVASSLRAAPASAGSLGTLLDYAAGVIPASQIRAAGAVGAIRYVSDRRPGGAWMLGKPIQLSEARDLSGNGLKIVSCYQYGKGSTADWLGGASAGVQHARRGSELHAAAGGPTSAPIYASIDDNPSYEQYKNQIVPYLRSWESVIGHQRTGVYANSKTIDWAVNDGLGSYFWQHNWGSPKGYTHPAAHLHQVEIDKRKVGGVGVDVNQILKPQFGQWA
4PMO Chain:A ((30-234))
-----------------------------------GSLGTLLDYAAGVIPASQIRAAGAVGAIRYVSDRRPGGAWMLGKPIQLSEARDLSGNGLKIVSCYQYGKGSTADWLGGASAGVQHARRGSELHAAAGGPTSAPIYASIDDNPSYEQYKNQIVPYLRSWESVIGHQRTGVYANSKTIDWAVNDGLGSYFWQHNWGSPKGYTHPAAHLHQVEIDKRKVGGVGVDVNQILKPQFGQWA
General information:
TITO was launched using:
RESULT:
Template:
4PMO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79158 for 1787 contacts (-44.3/contact) +
2D Compatibility (PS) -22432 + (NN) -11804 + (LL) 2560
1D Compatibility (HY) -24400 + (ID) 10250
Total energy: -145484.0 ( -81.41 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_4PMO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PMO-query.scw
PDB file :
Tito_Scwrl_4PMO.pdb
: