Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSLD-LTGRTAIITGASRGIGLAIAQQLAAAGAHVVLTARRQEAADEAAAQVGDRAL---GVGAHAVDEDAARRCVDLTLERFGSVDILINNAGTNPAYGPLLEQDHARFAKIFDVNLWAPLMWTSLVVTAWMGEHGGAVVNTASIGGMHQSPAMGMYNATKAALIHVTKQLALELSPR-IRVNAICPGVVRTRLAEALW--KDHEDPLAATIALGRIGEPADIASAVAFLVSDAASWITGETMIIDGGLLLGNALGFRAAPSTEH
3O4R Chain:A ((8-256))
-TRRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLRIRRLGEPEDCAGIVSFLCSEDASYITGETVVVGGG-----------------
General information:
TITO was launched using:
RESULT:
Template:
3O4R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172380 for 2063 contacts (-83.6/contact) +
2D Compatibility (PS) -26183 + (NN) -10756 + (LL) 1184
1D Compatibility (HY) -21200 + (ID) 4850
Total energy: -234185.0 ( -113.52 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_3O4R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O4R-query.scw
PDB file :
Tito_Scwrl_3O4R.pdb
: