Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAGRPLHAFEVVATRHLAPHMVRVVLGGSGFDTFVPSDFTDSYIKLVFVDDDVDVGRLPRPLTLDSFADLPTA-KRPPVRTMTVRHVDAAAREIAVDIVLHGEHGVAGPWAAGAQRGQPIYLMGPGGAYAPDPAADWHLLAGDESAIPAIAAALEALPPDAIGRAFIEVAGPDDEIGLTAPDAVEVNWVYRGGRADLVPEDRAGDHAPLIEAVTTTAWLPGQVHVFIHGEAQAVMHNLRPYVRNERGVDAKWASSISGYWRRGRTEEMFRKWKKELAEAEAGTH |
| 2GPJ Chain:A ((11-249)) | --------LEVIRSTYITPHMLRITLGGAGLAGF-PADQESAYIKLLF----------------------PQAGERPLMRTYTIRQ--QRDDEIDVDFVLHDTDGPASSWAKTAQVGELIQIGGPGLKKLINFEADWFLLAGDMTALPAISVNLAKLPNNAVGYAVIEVLSEADIQPLVHPEHVELHWVI-NPEAD--PEGR-----PLVERIAQLPWLAGEPAVWIACEFNS-MRALRRHFKQAHAL-PKSHFYTSSYWKIGCNEGEHKLVKQEDEQLENG-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GPJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -119229 for 1890 contacts (-63.1/contact) +
2D Compatibility (PS) -26170 + (NN) -14372 + (LL) 2448
1D Compatibility (HY) -17600 + (ID) 4950
Total energy: -179873.0 ( -95.17 by residue)
QMean score : 0.536
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