Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADKSKRPPRFDLKSADGSFGRLVQIGGTTIVVVFAVVLVFYIVTSRDDKKDGVAGPGDAVRVTSSKLVTQPGTSNPKAVVSFYEDFLCPACGIFERGFGPTVSKLVDIGAVAADYTMVAILDSASNQHYSSRAAAAAYCVADESIEAFRRFHAALFSKDIQPAELGKDFPDNARLIELAREAGVVGKVPDCINSGKYIEKVDGLAAAVNVHATPTVRVNGTEYEWSTPAALVAKIKEIVGDVPGIDSAAATATS
4K6X Chain:A ((15-213))
--------------------------------------------------------PGDAVRVTSSKLVTQPGTSNPKAVVSFYEDFLCPACGIFERGFGPTVSKLVDIGAVAADYTMVAILDSASNQHYSSRAAAAAYCVADESIEAFRRFHAALFSKDIQPAELGKDFPDNARLIELAREAGVVGKVPDCINSGKYIEKVDGLAAAVNVHATPTVRVNGTEYEWSTPAALVAKIKEIVGDVPGIDSAAATATS
General information:
TITO was launched using:
RESULT:
Template:
4K6X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141325 for 1677 contacts (-84.3/contact) +
2D Compatibility (PS) -21495 + (NN) -8828 + (LL) 3388
1D Compatibility (HY) -24800 + (ID) 9950
Total energy: -203010.0 ( -121.06 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_4K6X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K6X-query.scw
PDB file :
Tito_Scwrl_4K6X.pdb
: