Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIAGRSLVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTEDDVAAVRTGLAEFWKEQTCHQPSLQSL
3N39 Chain:C ((24-150))
-------LVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGG------GTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEFWQ------------
General information:
TITO was launched using:
RESULT:
Template:
3N39.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114595 for 928 contacts (-123.5/contact) +
2D Compatibility (PS) -13514 + (NN) -5127 + (LL) 1180
1D Compatibility (HY) -15600 + (ID) 4150
Total energy: -151806.0 ( -163.58 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_3N39.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N39-query.scw
PDB file :
Tito_Scwrl_3N39.pdb
: