Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSSFEGKVAVITGAGSGIGRALALNLSEKRAKLALSDVDTDGLAKTVRLAQALGAQVKSDRLDVAEREAVLAHADAVVAHFGTVHQVYNNAGIAYNGNVDKSEFKDIERIIDVD----FWGVVNGTKAFLPHVIASGDGHIVNISSLFGLIAVPGQSAYNAAKFAVRGFTEALRQEMLVARHP-VKVTCVHPGGIKTAVARNATVADGEDQQTFAEFFDRRLALHSPEMAAKTIVNGVAKGQARVVVGLEAKAVDVLARIMGSSYQRLVAAGVAKFFPWAK |
| 1YB1 Chain:A ((28-268)) | --SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFW----TTKAFLPAMTKNNHGHIVTVASAA-HVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPSTSLGPTLE--------------PEEVVNRLMHGILTEQKMIFIPSSIAFLTTLERIL-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YB1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -88229 for 1928 contacts (-45.8/contact) +
2D Compatibility (PS) -25258 + (NN) -11044 + (LL) 2928
1D Compatibility (HY) -16000 + (ID) 3900
Total energy: -141503.0 ( -73.39 by residue)
QMean score : 0.455
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