Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVVAEGAYPYCRLTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSSTGAEWVGDRP
2WP4 Chain:A ((10-137))
---------YPYCRLTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRD-------TRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSS----------
General information:
TITO was launched using:
RESULT:
Template:
2WP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100283 for 909 contacts (-110.3/contact) +
2D Compatibility (PS) -13531 + (NN) -9535 + (LL) 1160
1D Compatibility (HY) -18000 + (ID) 6050
Total energy: -146239.0 ( -160.88 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_2WP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WP4-query.scw
PDB file :
Tito_Scwrl_2WP4.pdb
: