Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEQEMTEQWLEGCAVQRIMFRDGLVLNFDDYNELVISVPLQLTLPAIETSPAEVVAIDPNDPADHERPLFDFAGATCTAFVWYDTGDLHLEFSDGHQIDVHPD-----DRVTAWELYGKYHGYAACLAPGKLRVVRHDVADANGDQ
1YVU Chain:A ((558-592))
------------------------------------------------------------------------------------------LGFKKGSKIVVHRDGRLYRDEVAAFKKYGELYGYS----------------------
General information:
TITO was launched using:
RESULT:
Template:
1YVU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6226 for 115 contacts (-54.1/contact) +
2D Compatibility (PS) -3287 + (NN) -2649 + (LL) 7540
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -8522.0 ( -74.10 by residue)
QMean score : -0.091
(partial model without unconserved sides chains):
PDB file :
Tito_1YVU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YVU-query.scw
PDB file :
Tito_Scwrl_1YVU.pdb
: