Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLARLITPFAERHGVINVP
5D1W Chain:A ((13-207))
------------RIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLARLITPFAERHGV----
General information:
TITO was launched using:
RESULT:
Template:
5D1W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134260 for 1431 contacts (-93.8/contact) +
2D Compatibility (PS) -20766 + (NN) -7531 + (LL) 888
1D Compatibility (HY) -26400 + (ID) 9750
Total energy: -197819.0 ( -138.24 by residue)
QMean score : 0.616
(partial model without unconserved sides chains):
PDB file :
Tito_5D1W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5D1W-query.scw
PDB file :
Tito_Scwrl_5D1W.pdb
: