Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAGRSERLVITGAGGQLGSHLTAQAAREGRDMLALTSSQWDITDPAAAERII--RHGDVVINCAAYTDVDGAESNEAVAYAVNATGPQHLARACARVGARLIHVSTDYVFDGDFGGAEPRPYEPTDETAPQGVYARSKLAGEQAVLAAFPEAAVVRTAWVYTGGTGKDFVAVMRRLAAGHGRVDVVDDQTGSPTYVADLAEALLALADAGVRGRVLHAANEGVVSRFGQARAVFEECGADPQRVRPVSSAQFPRPAPRSSYSALSSRQWALAGLTPLRHWRSALATALAAPANSTSIDRRLPSTRD |
1VL0 Chain:A ((14-283)) | ------KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGE----AKEPITEFDEVNPQSAYGKTKLEGENFVKALNPKYYIVRTAWLY--GDGNNFVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVIDEKNYG-TFHCTCKGICSWYDFAVEIFRLTGIDV-KVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITREWKESL---------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VL0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -134869 for 2365 contacts (-57.0/contact) +
2D Compatibility (PS) -29833 + (NN) -18848 + (LL) 1524
1D Compatibility (HY) -19200 + (ID) 5250
Total energy: -206476.0 ( -87.30 by residue)
QMean score : 0.543
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