Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAFGLDDLPRERR
3IJF Chain:X ((3-125))
--DVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAFGL--------
General information:
TITO was launched using:
RESULT:
Template:
3IJF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92027 for 1010 contacts (-91.1/contact) +
2D Compatibility (PS) -13509 + (NN) -8267 + (LL) 356
1D Compatibility (HY) -18800 + (ID) 6150
Total energy: -138397.0 ( -137.03 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_3IJF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IJF-query.scw
PDB file :
Tito_Scwrl_3IJF.pdb
: