Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVREAGEVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGHRAMIVAGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVRG
3OKR Chain:A ((6-231))
-----GEVVAIVPAA----------PKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGHRAMIVAGGSNRTDTVNLALTVLS---EPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQ----------YTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVRG
General information:
TITO was launched using:
RESULT:
Template:
3OKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161344 for 1664 contacts (-97.0/contact) +
2D Compatibility (PS) -22862 + (NN) -13416 + (LL) 1564
1D Compatibility (HY) -28800 + (ID) 10150
Total energy: -235008.0 ( -141.23 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_3OKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OKR-query.scw
PDB file :
Tito_Scwrl_3OKR.pdb
: