Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNQRQYPRTPLKCRIRISHPLFGELMAQTRDLSDTGVYVKHPDLTQLPTGSVVTGQVQDLPIDAPILQMEVVRVDAEGVGLRFLSEA
4Q9D Chain:A ((85-122))
-----------LVAAYRANTPLIITAGQQTREMSVVDPYLNNPDATTMPKPWVKWSYEPARAEDVPAAFMQAYAVAMQPPMGPVFLSI
General information:
TITO was launched using:
RESULT:
Template:
4Q9D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1419 for 154 contacts (-9.2/contact) +
2D Compatibility (PS) -3834 + (NN) -1264 + (LL) 356
1D Compatibility (HY) -800 + (ID) 650
Total energy: -7611.0 ( -49.42 by residue)
QMean score : -0.032
(partial model without unconserved sides chains):
PDB file :
Tito_4Q9D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q9D-query.scw
PDB file :
Tito_Scwrl_4Q9D.pdb
: