Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSASSPAAWR---GTLAGLIAFH-IFIIIAS--NYLVQLPITLFGWHTTWGAFSFPFIFLATD-LTVRLLGKGP--------ARLVIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFVPLYGMLLNGILKMLPGRPQSNA
4P6V Chain:B ((293-390))
------ASWRIIGGVMIGMILLSTLFNVIGSDTNAMFNMP-----WHLVLGGFAFGMFFMATDPVSASFTNSGKWAYGILIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDHVVVERNIKRRL----------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4P6V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59693 for 509 contacts (-117.3/contact) +
2D Compatibility (PS) -7500 + (NN) 3639 + (LL) 10300
1D Compatibility (HY) -11200 + (ID) 1400
Total energy: -65854.0 ( -129.38 by residue)
QMean score : 0.092
(partial model without unconserved sides chains):
PDB file :
Tito_4P6V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P6V-query.scw
PDB file :
Tito_Scwrl_4P6V.pdb
: