Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFMKKLMLAVGLFAVAGSAFAAKPCEELKAEIDAKI----KANGVPAYTLEIVDKGSVTDKKVVGTCDGGTKEIVYQRG
4NK3 Chain:A ((7-40))
----------------------APADRLKALVDAAVQPVMKANDIPGLAVAISLKGEPHYFSYGLASKEDGRRVTPETL
General information:
TITO was launched using:
RESULT:
Template:
4NK3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4725 for 100 contacts (-47.2/contact) +
2D Compatibility (PS) -3472 + (NN) -3115 + (LL) 2552
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -11410.0 ( -114.10 by residue)
QMean score : 0.747
(partial model without unconserved sides chains):
PDB file :
Tito_4NK3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NK3-query.scw
PDB file :
Tito_Scwrl_4NK3.pdb
: