Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKATYSMLSQVTFPLAEAGYYVVPVALADETFRQNGLTSAGDVHQVSPAKLREIYGADAALYVTVSDYGTRYMVISSATIVTASAKLVDLRSGTTLWTGSATASSEEGNGGNNGGLVGMLITAAVKQIINSSVEDAGYPIAGMTSARLLSAGQPGGLLYGPRSPRYGSD
4HRV Chain:A ((28-156))
VNGTWGMLASTAAPLSEAGYYVFPAAVVEETFKQNGMTNAADIHAVRPEKLHQIFGNDAVLYITVTEYGT-------VTTVSAKARLVDSRNGKELWSGS--ASIREGSNNSNSGLLGMLVSAVVNQIANSLT------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4HRV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40483 for 693 contacts (-58.4/contact) +
2D Compatibility (PS) -13213 + (NN) -3093 + (LL) 1720
1D Compatibility (HY) -11200 + (ID) 3350
Total energy: -69619.0 ( -100.46 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_4HRV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HRV-query.scw
PDB file :
Tito_Scwrl_4HRV.pdb
: