Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTLLLAGGLLVLSGCSLLMPTPDPNRAWVDLDTQPDADLAAVEVDDKSWDRTRYFEVDPGTRELTVRYQFTVDPTNIGPVDSPLWRDCQLNLKFKDFSAGQRYRLEAGHIGFRPWAKLYDQDNRELARGREGRCAKV
1IJA Chain:A ((85-123))
------------------------------------------------------YFKVGNETRKYKMTSIRDVKPTDVGVLDEQKGKDKQLTLITCDDYNEKTGVWEKRKIFVATEVK--------------------
General information:
TITO was launched using:
RESULT:
Template:
1IJA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1276 for 153 contacts (-8.3/contact) +
2D Compatibility (PS) -4096 + (NN) -3477 + (LL) 4212
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -7337.0 ( -47.95 by residue)
QMean score : 0.226
(partial model without unconserved sides chains):
PDB file :
Tito_1IJA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IJA-query.scw
PDB file :
Tito_Scwrl_1IJA.pdb
: