Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVPNSVSYYRSASYSHVGMVRKVNEDASLDAPEAGLWVVADGMGGHAAGDFVSSLIVDTLRRI----PAASSLPAYVGALRTGLAQVNERVRQEAGLRGVSVMGSTLVLLAARGNQASCLWAGDSRLYRLRGGVLEAISRDHSYVQELLDNALISEEEARHHPRANVVTRAVGVHEQLELSEAALHVLPGDSFLLCSDGLNKTADDSELRDVLSHSDPYAVVRSLVHLGLTRGAPDNITALVVRAF
2CM1 Chain:A ((29-248))
---------RYAARSDRGLVRANNEDSVYAG--ARLLALADGMGGHAAGEVASQLVIAALAHLDDDEPGGDLLAKLDAAVRAGNSAIAAQVEMEPDLEG---MGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKDDTFVQTLVDEGRITPEEAH------LIMRALTGHE-VEPTLTMREARAGDRYLLCSDGLSDPVSDETILEALQIPEVAESAHRLIELALRGGGPDNVTVVVADVV
General information:
TITO was launched using:
RESULT:
Template:
2CM1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133507 for 1737 contacts (-76.9/contact) +
2D Compatibility (PS) -21366 + (NN) -2205 + (LL) 1052
1D Compatibility (HY) -10400 + (ID) 3950
Total energy: -170376.0 ( -98.09 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_2CM1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CM1-query.scw
PDB file :
Tito_Scwrl_2CM1.pdb
: