Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAVDMFIKIGDVKGESKDKTHAEEIDVLAWSWGMSQSGSMHMGGGGGAGKVNVQDLSFTKYIDKSTPNLMMACSSGKHYPQAKLTIRKAGGENQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQKADGAKDGGPVKYGWNIRQNVQA |
1Y12 Chain:A ((2-162)) | -AVDMFIKIGDVKGESKDKTHAEEIDVLAWSWGMSQSGSMHMGGGG-AGKVNVQDLSFTKYIDKSTPNLMMACSSGKHYPQAKLTIRKAGGENQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQKADGAKDGGPVKYGWNIRQNVQA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1Y12.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 51204 for 1028 contacts (49.8/contact) +
2D Compatibility (PS) -15005 + (NN) 5481 + (LL) 36
1D Compatibility (HY) 10400 + (ID) 750
Total energy: 51366.0 ( 49.97 by residue)
QMean score : -0.069
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