Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDAKVDTRRLVGRLLLVTVLMFAFGFALVPLYDVMCRALGINGKTAGSAYSGEQQVDVGREVKVQFMTSNNIDMVWEFRSAGDQLVVHPGAVNQMVFYARNPSDKPMTAQAIPSIAPAEAAAYFHKTECFCFTQQVLQPGESIEMPVRFIVDRDLPKDV-----RHVTLAYTLFDITARKPPVPVAGR
1SO9 Chain:A ((21-151))
------------------------------------------------VEQASDLILD--EKIKVTFDANVAAGLPWEFVPVQRDIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDPEIVKPVETQGIKTLTLSYTFY---PREPSK-----
General information:
TITO was launched using:
RESULT:
Template:
1SO9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50728 for 903 contacts (-56.2/contact) +
2D Compatibility (PS) -12966 + (NN) -3229 + (LL) 4324
1D Compatibility (HY) -8800 + (ID) 2300
Total energy: -73699.0 ( -81.62 by residue)
QMean score : 0.345
(partial model without unconserved sides chains):
PDB file :
Tito_1SO9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SO9-query.scw
PDB file :
Tito_Scwrl_1SO9.pdb
: