Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRVNKTVLVLVALVALVLGLTVHKVLTAQRQADPTVLLDAGIVILPQTRKVPALEFTNQDGQAVSTASLKGRWHLLFFGYTFCPDVCPTTLAQLRELQGKLPQEVRDDLQVVFVSVDPNRDTPQQIKQYLGYFNAGFQGLTGTPENIQKLANAMSIPYIPADTSKPNYTVDHSGNLVIIGPDGEQHGFIRAPLNNAKLEAQLPGVLKPQA
4TXO Chain:D ((24-152))
------------------------------------------------------FQLTDQNGKAVTDKSLKGKPTLIFFGYTHSPDVCPTSLFEISEVLRAMGKDA-DKVNAIFISVDPERDTPATMKNYLSSFDPHLEGLSGDPAEIAKVITSYRVYAKKVPTKDGDYTMDHTALIYLMDRDGRFVSPFNLKRTPEEAAADLKRYL----
General information:
TITO was launched using:
RESULT:
Template:
4TXO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64644 for 950 contacts (-68.0/contact) +
2D Compatibility (PS) -14446 + (NN) -12893 + (LL) 5760
1D Compatibility (HY) -11200 + (ID) 2500
Total energy: -99923.0 ( -105.18 by residue)
QMean score : 0.648
(partial model without unconserved sides chains):
PDB file :
Tito_4TXO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TXO-query.scw
PDB file :
Tito_Scwrl_4TXO.pdb
: