Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQIEFFFDFGSPTTYLAWTQLPRIAAAHGASIAWRPMLLGGVFKATGNHSPIEVPAKGRYTLHDLARYAKRYGVPLAFNPAFPINTLTLMRGAQGYLGGEGFQP-----YLKAVFEALWVRQQNLGKPEVVAQVLAEAGFDPDEFLRLVGDEQVKEGLKATTEEAVRRGVFGAPSFFVGDQLFFGQDRLDFVAEVLAG
3FZ5 Chain:A ((7-197))
----IEFWFDFSSGYAFFAAQRIEALAAELGRTVLWRPYMLG----------LSSTPLKRDYAQRDWARIARQRG--LTFRPPADHPHVALA-ATRAFYWIEAQSPDAATAFAQRVFDLYFSDRLDTASPEAVSRLGPEVGLEPEALLAGIADPALKETVRKIGEDAVARGIFGSPFFLVDDEPFWGWDRMEMMAEWIRT
General information:
TITO was launched using:
RESULT:
Template:
3FZ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122633 for 1357 contacts (-90.4/contact) +
2D Compatibility (PS) -18685 + (NN) -3548 + (LL) 692
1D Compatibility (HY) -13200 + (ID) 2950
Total energy: -160324.0 ( -118.15 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_3FZ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FZ5-query.scw
PDB file :
Tito_Scwrl_3FZ5.pdb
: