Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLPANLGRLLPALCLGVLLSACSTFGQRDPLRIDLVGLEPLPGQ-GMEMRF-MVKLRVQNPNDEPIEYNGIALDLDVNGQPLASGVSDQTGEVPRFGERVVSVPLTVSAFSAFRQAWGLSNNAPTQGMPYVVKGKLAGGLFGTVRFSEKGTLDFSGPAVGAPKTKGL
4JMR Chain:A ((48-87))
----------------------------RNPLHGEVIGLRLTEGWWGQIERFQMVRLILQNDDNEPLQRPRYEVIQRAVNPHTMFMISGPLAELQLAFQDLDLPEGPLRFGPLANGHYVQGDPYSSSYRPVTMAETAQMTRDELEDVLNTQSEIEIQMINLLELYEVE
General information:
TITO was launched using:
RESULT:
Template:
4JMR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4287 for 148 contacts (-29.0/contact) +
2D Compatibility (PS) -4029 + (NN) -3559 + (LL) 1924
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -13151.0 ( -88.86 by residue)
QMean score : 0.186
(partial model without unconserved sides chains):
PDB file :
Tito_4JMR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JMR-query.scw
PDB file :
Tito_Scwrl_4JMR.pdb
: