Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTLPPCPQCNSEYTYEDGALLVCPECAHEWSPNEAATASDDGKVIKDSVGNVLQDGDTITVIKDLKVKGSSLVVKVGTKVKNIRLVDGDHDIDCKIDGIGAMKLKSEFVRKV
2AKK Chain:A ((5-71))
---------------------------------------------VRDCNGALLADGDNVSLIKDLKLKGSSTVLKRGTMIRGIRLTDSEDEIEGRTDKIKGLVLRTEFLKKA
General information:
TITO was launched using:
RESULT:
Template:
2AKK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25336 for 438 contacts (-57.8/contact) +
2D Compatibility (PS) -7406 + (NN) -1514 + (LL) 1764
1D Compatibility (HY) -5200 + (ID) 1500
Total energy: -39192.0 ( -89.48 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_2AKK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AKK-query.scw
PDB file :
Tito_Scwrl_2AKK.pdb
: