Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLLSLEPRGRQSRWMLLASPLLAGLLTLVCGALLFACLGHDPW-QTLHTVLVQPLSDLY-GLGELLVKAMPILL--CALGLALAYQARVWNIGAEGQLLVGALAGSAVAIQLLDWQSRWALAWVLLAGTAAGALWAGFAAWLRTRFNANEILTTIMLNYIALNLLLYGVHGPLKDPDGFNFPQSALFGEASRLPALFEDSRVHLGALFGLLALAAVWVLAQRSFLGFQVRVLGLDRRAAGFVGFREKRLVWFVLLFSGALAGLAGVCEVAGPIGQLVPQVSPGYGYAAITVAFLGRLNPFGILCASLLMALLYLGGEAAQMSLNLPLALSGLFQGMMLFFLLACDVLILYRPRLHGRWRKRPALRDALA |
| 4IZM Chain:A ((17-99)) | ------------------------LIGLILGAIVGLILGHYGYAHAVHT-YVKPFGDLFVRLLKMLV--MPIVFASCVVGAASISPARLGRVGV--KIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYCFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVP |
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General information:
TITO was launched using:
| RESULT:
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Template: 4IZM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -30157 for 331 contacts (-91.1/contact) +
2D Compatibility (PS) -7751 + (NN) -1447 + (LL) 2240
1D Compatibility (HY) -12000 + (ID) 1550
Total energy: -50665.0 ( -153.07 by residue)
QMean score : -0.219
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