Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVASKEPIMSQSERRFSFEFFPAKTEAGHEKLLATARNLAGYKPDFFSCTYGAGGSTRDRTLSTVLQLDGEVKVPTAPHLSCVGDSKAELRELLGRYREAGIRRIVALRGDLPSGMGMASGE---LRYANELVDFIRTETGDHFHIEVAAYPEVHPQARSFEDDLANFVRKVKAGASSAITQYFFNADAYFYFVERVAKLGVDIPVVPGIMPITNYSKLARFSDACGAELPRWIRKQLEAYGDDSRSIQAFG-EQVISEMCERLLEGGAPGLHFYTLNQADPSLAIWKNLQLPR
1V93 Chain:A ((15-289))
---------------FSFEFFPPKDPEGEEALFRTLEELKAFRPAFVSITYGAMGSTRERSVAWAQRIQSLGLNPLA-HLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHPESESLEADLRHFKAKVEAGLDFAITQLFFNNAHYFGFLERARRAGIGIPILPGIMPVTSYRQLRRFTEVCGASIPGPLLAKLERHQDDPKAVLEIGVEHAVRQVAE-LLEAGVEGVHFYTLNKSPATRMVLERLGLRP
General information:
TITO was launched using:
RESULT:
Template:
1V93.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148385 for 2216 contacts (-67.0/contact) +
2D Compatibility (PS) -30120 + (NN) -19412 + (LL) 1284
1D Compatibility (HY) -22400 + (ID) 5950
Total energy: -224983.0 ( -101.53 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_1V93.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V93-query.scw
PDB file :
Tito_Scwrl_1V93.pdb
: