Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRYALITGASSGIGLALAEALARRGRALILVARQRDALESIAYELAQRFGVEVLFRTCDLSEPLQLSGLLHELEQGERQIDLLVNNAGIGTSGPFIDQEWAREQELIELNILALARLCHSLGARMAAQGGGQILNIASVAAFQPGAWMSNYYASKAYVLHFSEGLREELKERGVKVSVLCPGPTRTAFFREAGMRLGRLDRSKLMMTPEEVALLALRGLDKNRALIVPGWRNRLLALSPRLAPRWLVRRLAARINASAVPSAPRG
4BMV Chain:A ((8-227))
-----LITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDAR-IGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPE---VMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRY------
General information:
TITO was launched using:
RESULT:
Template:
4BMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151522 for 1842 contacts (-82.3/contact) +
2D Compatibility (PS) -23997 + (NN) -14776 + (LL) 1016
1D Compatibility (HY) -17200 + (ID) 4500
Total energy: -210979.0 ( -114.54 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_4BMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BMV-query.scw
PDB file :
Tito_Scwrl_4BMV.pdb
: