Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLPAVTPGWPAIPPGATLGGFDGQ--GRRSWATISRAPSGASCSRNRSATRTYGWGATATTPATITGIPSTTAPAT
2D3Q Chain:A ((185-212))
-----VFPGQAVVPPGIILTGRDGDTGTRPSWALDGSFMAFRHFQQKVPEFNAYTLANAIPANSAGNLTQQEGAEFL
General information:
TITO was launched using:
RESULT:
Template:
2D3Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4140 for 98 contacts (42.2/contact) +
2D Compatibility (PS) -3024 + (NN) -3226 + (LL) 488
1D Compatibility (HY) -800 + (ID) 700
Total energy: -3122.0 ( -31.86 by residue)
QMean score : 0.243
(partial model without unconserved sides chains):
PDB file :
Tito_2D3Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D3Q-query.scw
PDB file :
Tito_Scwrl_2D3Q.pdb
: