Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLILTRRVGETLMVGDDVTVTVLGVKGNQVRIGVNAPKEVAVHREEIYQRIQKEKDQEPNH
1VPZ Chain:A ((2-55))
-LILTRRVGETLMVGDDVTVTVLGVKGNQVRIGVNAPKEVAVHREEIYQRIQKEK------
General information:
TITO was launched using:
RESULT:
Template:
1VPZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4911 for 236 contacts (-20.8/contact) +
2D Compatibility (PS) -5853 + (NN) -1050 + (LL) 200
1D Compatibility (HY) 1600 + (ID) 650
Total energy: -10664.0 ( -45.19 by residue)
QMean score : 0.080
(partial model without unconserved sides chains):
PDB file :
Tito_1VPZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VPZ-query.scw
PDB file :
Tito_Scwrl_1VPZ.pdb
: