Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSHSPIATVAQALRRAERILVITGAGLSADSGMPTYRGLGGLYNGRTEEGLPIEAALSGPMLRRDPALCWKYLAELGKACLAARPNAGHEAIAELQKHKPECWVLTQNIDGFHRQAGSPAERLIEIHGELAPLYCQSCGAESGGLEEHLHGQLP--PRCAACGGVLRPPVVLFEEMLPEEAIDTLYRELRKGFDAVLVVGTTASFPYIVEPV----LRTRQAGGFTAEVNPGVTDLSERVDVKMTGRALDIMPQVVSHIYR
1M2G Chain:A ((7-242))
-----------KTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFA-----KDPEKVWKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGS--RNVIHLHGSLRVVRCTSC---NNSFEVESAPKIPPLPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERA-DVIIVAGTSA----VVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVRK
General information:
TITO was launched using:
RESULT:
Template:
1M2G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110185 for 1906 contacts (-57.8/contact) +
2D Compatibility (PS) -24682 + (NN) -11307 + (LL) 1156
1D Compatibility (HY) -18000 + (ID) 4350
Total energy: -167368.0 ( -87.81 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_1M2G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M2G-query.scw
PDB file :
Tito_Scwrl_1M2G.pdb
: