Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSIKKNLGLLAMTAALAACASNPNDLPDFPEHEYAATQQVGEGVINGDLYLTSASGAIQKGTNTKVALEPATSYMKAYYAKFGNLDAAKRDPDVQPPVLDPRRATYVREATTDQNGRFDFDHIPNGTYYISSELTWSAQSDGKTITEGGTVTKLVTVSGSQPQKVLLTR
1XPN Chain:A ((20-170))
-------------------MASNPNDLPDFPEHEYAATQQVGGGVINGDLYLTSASGAIQKGTNTKVALEPATSYMKAYYAKFGNLDAAKRDPDVQPPVLDPRRATYVREATTDQNGRFDFDHIPNGTYYISSELTWSAQSDGKTITEGGTVTKLVTVSGSQPQKVLLTR
General information:
TITO was launched using:
RESULT:
Template:
1XPN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10014 for 1035 contacts (-9.7/contact) +
2D Compatibility (PS) -16236 + (NN) -11584 + (LL) 2120
1D Compatibility (HY) -16000 + (ID) 7450
Total energy: -59164.0 ( -57.16 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_1XPN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XPN-query.scw
PDB file :
Tito_Scwrl_1XPN.pdb
: