Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRAS
4F0V Chain:A ((37-188))
--SLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRAS
General information:
TITO was launched using:
RESULT:
Template:
4F0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98004 for 1280 contacts (-76.6/contact) +
2D Compatibility (PS) -16445 + (NN) -6822 + (LL) 132
1D Compatibility (HY) -20400 + (ID) 7600
Total energy: -149139.0 ( -116.51 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_4F0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F0V-query.scw
PDB file :
Tito_Scwrl_4F0V.pdb
: