Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSVIIALAALGLLMLAAYRGYSVILFAPLAALGAVLLTDPSAVAPTFTGVFMEKMVGFIKLYFPVFLLGAVFGKLIELAGFSRSIVAAAIRLLGTRQAMLVIVLVCALLTYGGVSLFVVVFAVYPFAAEMFRQSDIPKRLIP------ATIALGAFSFT-MDALPGTPQIQNIIPSTFFGTHAWAAPWLG--TLGALFVFAVGMLYLRRQANKARRNGEGYGSDLRNEPETADDLRLPNPWLALSPLVLVGVANLLFTHWIPQWYGQVHTLQLAGMATPLQTEVGKLTAIWAVQAALLLGILLVLASGFAAIRSRLAEGTRSAVAGSLLAAMNTASEYGFGAVIASLPGFLVLADALKSIPNPLVNEAITVTLLAGITGSASGGMSIALAAMSDTFIAAANAAQIPLEVLHRVAAMASGGMDTLPHNGAVITLLAVTGLTHREAYKVIFGITLIKTLAVFFVIGLFYATGLV |
| 2H56 Chain:A ((78-178)) | --------------------------------------------------------------------------------------------------------------------------LYRVSDEALRQAGVSKRKIEYIRHVCEHVESGRLDFTELEGAEATTVIEKL--TAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAKWLYGNGEGDGKKLLIYHGKAWAPYETVACLYLWKAAGTFAEEYRSLEELLHH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2H56.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -25496 for 471 contacts (-54.1/contact) +
2D Compatibility (PS) -9307 + (NN) -1267 + (LL) 28524
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: -12546.0 ( -26.64 by residue)
QMean score : -0.066
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