Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHGCFTICRKFSLALAILALAGCSYFFAPRVELQRLTLDVAARANDDSPIAVDFVAVKDAELFKELAGLPASQWFANREQYRRDYRQQFAVWSLELVPGQFIESESFPLRGDRATGLLVFAGYNTPGAHRLRLDQQQRVWLRLDTREMRLVNDPATR
4P90 Chain:A ((175-234))
-----------------------------------------------------------------EMVGTP--YWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTP-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4P90.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4507 for 374 contacts (-12.1/contact) +
2D Compatibility (PS) -6228 + (NN) -2926 + (LL) 8512
1D Compatibility (HY) -5200 + (ID) 900
Total energy: -11249.0 ( -30.08 by residue)
QMean score : -0.055
(partial model without unconserved sides chains):
PDB file :
Tito_4P90.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P90-query.scw
PDB file :
Tito_Scwrl_4P90.pdb
: