Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTFVVLEECIRCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVAAIRAEDEVPLGQRQFIALNGELAAHPNWTQITRKK-PAPDDHDAWFGLPGKLAELDRNGA
1PC4 Chain:A ((2-107))
-AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECAAQAIFSEDEVPEDMQEFIQLNAELAEV--WPNITEKKDPLPDAED-WDGVKGKLQHLER---
General information:
TITO was launched using:
RESULT:
Template:
1PC4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82279 for 809 contacts (-101.7/contact) +
2D Compatibility (PS) -11274 + (NN) -10247 + (LL) 24
1D Compatibility (HY) -12800 + (ID) 3650
Total energy: -120226.0 ( -148.61 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_1PC4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PC4-query.scw
PDB file :
Tito_Scwrl_1PC4.pdb
: