Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIPLIGQLYRNNNVVTSIHGRGLINRSVIAIMKAHRFARHRMADDAELSVHETFPILKAMSELKLGAASVDLGKMVAKFKAEGNGRSIEDFVKAELAEVVGKQNGDAREGTDVVLYGFGRIGRLLARILIEKTGGGDGLRLRAIVVRKGAENDLVKR---ASLLRRDSVHGPFDGTITIDEENNTLTANGNLIQVIYSNDPASIDYTQYGIKNALLVDNTGKWRDAEGLGQHLKCPGIDRVVLTAPGKGALKNIVHGINHTDIGADDKIISAASCTTNAIVPVLKAVNDQYGIVNGHVETVHSYTNDQNLIDNFHKGSRRGRSAPLNMVITETGAATAAAKALPVLKGKLTGNAIRVPTPNVSMAILNLNLEKATTREEINEYLRQMAMHSDLQKQIDFVSSQEVVSTDFVGSRHAGVVDAEAT-ICNDNRVVLYVWYDNEFGYSCQVVRVMEDMAGVNPPAFPR |
1HDG Chain:O ((3-327)) | ----------------------------------------------------------------------------------------------------------------VAINGFGRIGRLVYRIIYERKN--PDIEVVAI-------NDLTDTKTLAHLLKYDSVHKKFPGKVEYTE--NSLIVDGKEIKVFAEPDPSKLPWKDLGVD--FVIESTGVFRNREKAELHLQA-GAKKVIITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSYTNDQRVLDLPHKDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKE-ATEGRLKGIIGY-NDEPIVSSDIIGTTFSGIFDATITNVIGGKLVKVASWYDNEYGYSNRVVDTLE------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1HDG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -198262 for 2796 contacts (-70.9/contact) +
2D Compatibility (PS) -34549 + (NN) -12660 + (LL) 8888
1D Compatibility (HY) -27200 + (ID) 6800
Total energy: -270583.0 ( -96.78 by residue)
QMean score : 0.479
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